PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g062680.1.1
Common Namelanceolate
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 401aa    MW: 43397.7 Da    PI: 6.8442
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g062680.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.31.6e-3528168289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssa 82 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++          s+ +a++++ e+++ ++
  Solyc07g062680.1.1  28 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptigtaSAAAATNTNLEQEQAQK 118
                         79**************************************************************999988864322222222222222222 PP

                 TCP  83 snsssg...........................................k 89 
                         +++ ++                                            
  Solyc07g062680.1.1 119 QQEDNNfafqqgnvslfdnvagpsskraiesntasflppslesdaiadtI 168
                         22222245666666666665555555555555555555555555554441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3128200IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5433088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009047anatomystem
PO:0020042anatomysimple leaf
PO:0025073anatomybranch
PO:0001050developmental stageleaf development stage
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAETSRLGIR NTVGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKPAIDELAE LPAWKPTIGT ASAAAATNTN LEQEQAQKQQ  120
EDNNFAFQQG NVSLFDNVAG PSSKRAIESN TASFLPPSLE SDAIADTIKS FFPMGSSTSA  180
NSSAMQFHSF QEPHMLSRAN SQNQDLSLSL QFQDPILLHH QNQQAQHHNQ TNHREQEQVQ  240
GQAPAHFGGN TPLGFDTSGW SMHQRLRSWS DSREIGPGGS GGAVTGPGGY LFNSPPAPAL  300
LQQLFGQNQF FSQRGPLQSS NTSSVRAWMD PSAIAIASGD PSNHHQAALS MYPSTIPGYG  360
FASEVGGFSG FRIPARIQGE EEEHDGISDK PSSASSDSRH *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.199220.0flower| fruit| leaf| stem
Function -- GeneRIF ? help Back to Top
  1. Results imply that dynamic spatial and temporal leaf maturation, coordinated by LA-like genes, enables the formation of variable leaf forms.
    [PMID: 21228002]
  2. Manipulations in LANCEOLATE activity lead to altered expression of genes involved in gibberellin biosynthesis, degradation and response.
    [PMID: 21771122]
  3. The interaction between auxin, Entire and Lanceolate in tomato leaf development, was examined. Auxin and LANCEOLATE affect leaf shape in tomato via different developmental processes.
    [PMID: 22902691]
  4. Data show that APETALA1/fruitfull (AP1/FUL) MADS box genes AP1, TM4 and MBP7 were involved in tomato leaf development and are repressed by lanceolate (LA), which was regulated by miR319.
    [PMID: 23771895]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0915710.0Solanum lycopersicum lanceolate mRNA, complete cds
GenBankEF0915730.0Solanum lycopersicum lanceolate gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234335.20.0cycloidea
SwissprotQ8LPR51e-102TCP4_ARATH; Transcription factor TCP4
TrEMBLA2I5C70.0A2I5C7_SOLLC; Lanceolate
STRINGSolyc07g062680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-88TCP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ori N, et al.
    Regulation of LANCEOLATE by miR319 is required for compound-leaf development in tomato.
    Nat. Genet., 2007. 39(6): p. 787-91
    [PMID:17486095]
  3. Shleizer-Burko S,Burko Y,Ben-Herzel O,Ori N
    Dynamic growth program regulated by LANCEOLATE enables flexible leaf patterning.
    Development, 2011. 138(4): p. 695-704
    [PMID:21228002]
  4. Yanai O,Shani E,Russ D,Ori N
    Gibberellin partly mediates LANCEOLATE activity in tomato.
    Plant J., 2011. 68(4): p. 571-82
    [PMID:21771122]
  5. Ben-Gera H,Ori N
    Auxin and LANCEOLATE affect leaf shape in tomato via different developmental processes.
    Plant Signal Behav, 2012. 7(10): p. 1255-7
    [PMID:22902691]
  6. Burko Y, et al.
    A role for APETALA1/fruitfull transcription factors in tomato leaf development.
    Plant Cell, 2013. 25(6): p. 2070-83
    [PMID:23771895]